PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g078180.1.1
Common NameLOC101267832
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 235aa    MW: 26454.6 Da    PI: 5.2396
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g078180.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.8e-19133183255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr ++ +g+++AeIrdp +ng  +r++lg++ tae+Aa a+++a+ +++g
  Solyc08g078180.1.1 133 HYRGVRVRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEDAALAYDKAAFRMRG 183
                         8********.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-31132191IPR001471AP2/ERF domain
CDDcd000181.28E-30132191No hitNo description
SuperFamilySSF541715.82E-23133193IPR016177DNA-binding domain
PROSITE profilePS5103223.788133191IPR001471AP2/ERF domain
SMARTSM003809.2E-38133197IPR001471AP2/ERF domain
PfamPF008471.9E-13133183IPR001471AP2/ERF domain
PRINTSPR003674.5E-10134145IPR001471AP2/ERF domain
PRINTSPR003674.5E-10157173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MYSNCELEND FSVLESIRRY LLEDWEAPLT SSENSTSSEF SRSNSIESNM FSNSFDYTPE  60
IFQNDILNEG FGFGFEFETS DFIIPKLESQ MSIESPEMWN LPEFVAPLET AAEVKVETPV  120
EMTTTTTKPK AKHYRGVRVR PWGKFAAEIR DPAKNGARVW LGTYETAEDA ALAYDKAAFR  180
MRGSRALLNF PLRINSGEPD PVRVGSKRSS MSPEHCSSAS STKRRKKVAR GTKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-42130198270ATERF1
3gcc_A7e-42130198270ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.81730.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO58927600.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004245806.11e-174PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotO803383e-57EF101_ARATH; Ethylene-responsive transcription factor 2
TrEMBLK4CNH71e-174K4CNH7_SOLLC; Uncharacterized protein
STRINGSolyc08g078180.1.11e-173(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.13e-41ethylene responsive element binding factor 2
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]